Transcript: ENSDART00000141794.3 rimkla-203

Description

ribosomal modification protein rimK-like family member A [Source:NCBI gene;Acc:447815]

Gene Synonyms

NAAGS, wu:fc60e09, zgc:92164

Location

Chromosome 8: 26,874,924-26,884,384 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 224 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000016830.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005337.10	rimkla-201	4229	405aa	ENSDARP00000007712.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q66HZ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141794.3	rimkla-203	798	266aa	ENSDARP00000114117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QZ76	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000132485.2	rimkla-202	559	99aa	ENSDARP00000115365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7A0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 798 bps, Translation length: 266 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000141794.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000141794.3 rimkla-203

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Transcript: ENSDART00000141794.3 rimkla-203

Summary

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