Transcript: ENSDART00000141722.3 ptbp2b-203

Description

polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]

Gene Synonyms

im:7153495, ptbp2, si:ch211-160l17.2, wu:fa08f05, wu:fc05d10

Location

About this transcript

This transcript has 6 exons, is associated with 258 variant alleles and maps to 131 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000038648.10	ptbp2b-201	2900	538aa	ENSDARP00000036256.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PM68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149789.2	ptbp2b-204	281	94aa	ENSDARP00000124568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000141722.3	ptbp2b-203	759	163aa	ENSDARP00000115758.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135075.2	ptbp2b-202	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 759 bps, Translation length: 163 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141722.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.