Transcript: ENSDART00000141691.3 opn7d-202

Description

opsin 7, group member d [Source:ZFIN;Acc:ZDB-GENE-081105-91]

Gene Synonyms

Opn5L1c, novopsin-6, novospin-6, si:ch211-37p17.5

Location

About this transcript

This transcript has 5 exons, is annotated with 43 domains and features, is associated with 423 variant alleles and maps to 117 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098326.6	opn7d-201	1212	403aa	ENSDARP00000089098.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFB2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141691.3	opn7d-202	1124	374aa	ENSDARP00000115929.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,124 bps, Translation length: 374 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141691.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.