Transcript: ENSDART00000141679.2 cul1b-204

Description

cullin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2887]

Gene Synonyms

cul1, wu:fi43h07, wu:fj43a08, zgc:111899, zgc:55483

Location

Chromosome 24: 17,366,309-17,368,570 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 242 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007691.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000134947.3	cul1b-203	2966	775aa	ENSDARP00000118996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000024691.9	cul1b-201	2935	774aa	ENSDARP00000002286.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000122757.2	cul1b-202	2328	774aa	ENSDARP00000110769.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000141679.2	cul1b-204	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 753 bps,

Version

ENSDART00000141679.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141679.2 cul1b-204

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Transcript: ENSDART00000141679.2 cul1b-204

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