Transcript: ENSDART00000141639.2 sim1b-202

Description

SIM bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-041210-5]

Gene Synonyms

Sim1, si:ch211-152c2.1

Location

About this transcript

This transcript has 6 exons, is associated with 503 variant alleles and maps to 65 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023483.7	sim1b-201	1761	586aa	ENSDARP00000003984.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C1JIE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141639.2	sim1b-202	816	74aa	ENSDARP00000122451.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 816 bps, Translation length: 74 residues

Version

ENSDART00000141639.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.