Transcript: ENSDART00000141563.2 ncanb-203

Description

neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]

Gene Synonyms

cspg3, ncan, si:ch211-123b7.1

Location

Chromosome 22: 17,999,392-18,022,416 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 28 variant alleles and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005783.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000191154.1	ncanb-204	4242	1254aa	ENSDARP00000152460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000005724.9	ncanb-201	3863	1254aa	ENSDARP00000020815.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEZ8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141563.2	ncanb-203	961	320aa	ENSDARP00000116782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135716.3	ncanb-202	929	309aa	ENSDARP00000113216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 961 bps, Translation length: 320 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000141563.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141563.2 ncanb-203

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Transcript: ENSDART00000141563.2 ncanb-203

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