Transcript: ENSDART00000141554.3 abca2-202

Description

ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]

Gene Synonyms

si:dkey-266h7.1

Location

Chromosome 5: 25,088,622-25,174,420 reverse strand.

About this transcript

This transcript has 47 exons, is annotated with 74 domains and features, is associated with 21 variant alleles and maps to 238 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013500.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000141554.3	abca2-202	7870	2418aa	ENSDARP00000114904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000162774.2	abca2-203	1073	95aa	ENSDARP00000136081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000183171.1	abca2-204	753	250aa	ENSDARP00000144943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000132773.2	abca2-201	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 47, Coding exons: 47, Transcript length: 7,870 bps, Translation length: 2,418 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141554.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141554.3 abca2-202

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Transcript: ENSDART00000141554.3 abca2-202

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