Transcript: ENSDART00000141401.3 arhgap12b-202

Description

Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]

Gene Synonyms

arhgap12, zgc:73239

Location

Chromosome 12: 26,706,745-26,715,946 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 463 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000026482.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046959.5	arhgap12b-201	4227	817aa	ENSDARP00000046958.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000158440.2	arhgap12b-204	4670	841aa	ENSDARP00000134177.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IKK1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000185762.1	arhgap12b-205	4617	841aa	ENSDARP00000157652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IKK1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000141401.3	arhgap12b-202	831	277aa	ENSDARP00000114978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000144355.3	arhgap12b-203	463	117aa	ENSDARP00000127178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 831 bps, Translation length: 277 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000141401.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141401.3 arhgap12b-202

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Transcript: ENSDART00000141401.3 arhgap12b-202

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