Transcript: ENSDART00000141365.2 ocln1-202

Description

occludin1 [Source:ZFIN;Acc:ZDB-GENE-061013-134]

Gene Synonyms

zgc:154006

Location

Chromosome 2: 24,388,454-24,390,955 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 187 variant alleles and maps to 32 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061797.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088572.7	ocln1-201	1893	537aa	ENSDARP00000083005.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000177510.2	ocln1-205	2506	537aa	ENSDARP00000144463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BB8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165226.2	ocln1-204	1619	537aa	ENSDARP00000132991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BB8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000155442.2	ocln1-203	876	230aa	ENSDARP00000127777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000141365.2	ocln1-202	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 546 bps,

Version

ENSDART00000141365.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141365.2 ocln1-202

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Transcript: ENSDART00000141365.2 ocln1-202

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