Transcript: ENSDART00000141238.3 sdk1b-202

Description

sidekick cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-090311-17]

Gene Synonyms

si:rp71-86k19.1, zgc:171522

Location

About this transcript

This transcript has 44 exons, is annotated with 133 domains and features, is associated with 3024 variant alleles and maps to 283 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000141238.3	sdk1b-202	6642	2095aa	ENSDARP00000116036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R721	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000091205.6	sdk1b-201	5871	1956aa	ENSDARP00000085638.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTQ5	-
ENSDART00000162060.2	sdk1b-204	1073	201aa	ENSDARP00000139978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UKU9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144164.3	sdk1b-203	935	199aa	ENSDARP00000121891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R796	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 6,642 bps, Translation length: 2,095 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141238.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.