Transcript: ENSDART00000141173.3 elavl4-203

Description

ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]

Gene Synonyms

elav-related D, elrd, wu:fc24h01, zHuD

Location

Chromosome 8: 16,004,230-16,054,314 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 1085 variant alleles and maps to 32 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045639.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134787.3	elavl4-202	1818	408aa	ENSDARP00000116684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000165141.2	elavl4-205	6093	395aa	ENSDARP00000141994.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000172510.2	elavl4-206	5416	411aa	ENSDARP00000133629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IEW8 A0AB32TT42	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000110171.5	elavl4-201	2109	403aa	ENSDARP00000098371.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGR7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000141173.3	elavl4-203	797	130aa	ENSDARP00000118998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000144139.2	elavl4-204	1293	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 797 bps, Translation length: 130 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000141173.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000141173.3 elavl4-203

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Transcript: ENSDART00000141173.3 elavl4-203

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