Transcript: ENSDART00000141114.3 ms4a17a.9-201

Description

membrane-spanning 4-domains, subfamily A, member 17A.9 [Source:ZFIN;Acc:ZDB-GENE-050320-79]

Gene Synonyms

zgc:113040

Location

Chromosome 4: 76,608,793-76,632,635 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 19 domains and features, is associated with 627 variant alleles and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094854.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184042.1	ms4a17a.9-203	2471	247aa	ENSDARP00000149635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUU9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000146610.3	ms4a17a.9-202	2247	247aa	ENSDARP00000116235.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUU9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000141114.3	ms4a17a.9-201	1085	241aa	ENSDARP00000120897.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5BLB6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,085 bps, Translation length: 241 residues

Version

ENSDART00000141114.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000141114.3 ms4a17a.9-201

Summary

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Transcript: ENSDART00000141114.3 ms4a17a.9-201

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