Transcript: ENSDART00000141111.2 ptpn2a-203

Description

protein tyrosine phosphatase non-receptor type 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1196]

Gene Synonyms

hm:zeh1546, ptpn2, zgc:63623

Location

About this transcript

This transcript has 2 exons, is associated with 273 variant alleles and maps to 44 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136168.3	ptpn2a-202	1819	392aa	ENSDARP00000118955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8I4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000130382.3	ptpn2a-201	914	272aa	ENSDARP00000109132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000141111.2	ptpn2a-203	814	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 814 bps,

Version

ENSDART00000141111.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.