Transcript: ENSDART00000141093.4 si:dkeyp-53e4.4-201

Description

si:dkeyp-53e4.4 [Source:ZFIN;Acc:ZDB-GENE-110913-37]

Location

Chromosome 4: 43,523,363-43,545,131 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 44 domains and features, is associated with 40 variant alleles and maps to 842 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000114935.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000181832.1	si:dkeyp-53e4.4-202	4055	1218aa	ENSDARP00000154399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QMW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000182252.1	si:dkeyp-53e4.4-203	6971	1017aa	ENSDARP00000152110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QBT3	-
ENSDART00000183921.1	si:dkeyp-53e4.4-204	3944	1181aa	ENSDARP00000144686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PV68	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000141093.4	si:dkeyp-53e4.4-201	3663	1173aa	ENSDARP00000122587.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QW25	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,663 bps, Translation length: 1,173 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000141093.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000141093.4 si:dkeyp-53e4.4-201

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Transcript: ENSDART00000141093.4 si:dkeyp-53e4.4-201

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