Transcript: ENSDART00000140968.3 hps3-201

Description

HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-061110-115]

Gene Synonyms

zgc:152969

Location

About this transcript

This transcript has 18 exons, is annotated with 7 domains and features, is associated with 617 variant alleles and maps to 187 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140968.3	hps3-201	3313	1042aa	ENSDARP00000121267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R654	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000165430.2	hps3-202	3322	1003aa	ENSDARP00000141228.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZE2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,313 bps, Translation length: 1,042 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000140968.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.