Transcript: ENSDART00000140920.2 prom1b-203

Description

prominin 1 b [Source:ZFIN;Acc:ZDB-GENE-031003-1]

Gene Synonyms

proml2

Location

Chromosome 1: 22,720,988-22,726,233 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 536 variant alleles and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000034007.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134719.3	prom1b-201	3885	853aa	ENSDARP00000112980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000158915.2	prom1b-204	2556	851aa	ENSDARP00000137108.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQK4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134831.2	prom1b-202	546	182aa	ENSDARP00000122797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSA6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140920.2	prom1b-203	371	124aa	ENSDARP00000112575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RD29	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 371 bps, Translation length: 124 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140920.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140920.2 prom1b-203

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Transcript: ENSDART00000140920.2 prom1b-203

Summary

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