Transcript: ENSDART00000140869.2 si:dkey-88l16.3-201

Description

si:dkey-88l16.3 [Source:ZFIN;Acc:ZDB-GENE-030131-6015]

Gene Synonyms

fi30e01, wu:fi30e01

Location

Chromosome 10: 14,982,977-15,017,039 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 185 domains and features, is associated with 654 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094055.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140869.2	si:dkey-88l16.3-201	5349	1765aa	ENSDARP00000117883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QN45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000175732.2	si:dkey-88l16.3-202	5875	1615aa	ENSDARP00000144247.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YAQ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000187363.1	si:dkey-88l16.3-203	5875	1615aa	ENSDARP00000150884.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q951	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 5,349 bps, Translation length: 1,765 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000140869.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140869.2 si:dkey-88l16.3-201

Summary

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Transcript: ENSDART00000140869.2 si:dkey-88l16.3-201

Summary

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