Summary
Sequence
- Exons
- cDNA
- Protein
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSDART00000140586.2 col1a1a-202

Description

collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]

Gene Synonyms

alpha1(I), cb21, chi, chihuahua, col1a1, med, microwaved, sb:cb21, sb:cb384, wu:fa99c12, wu:fb02c06

Location

About this transcript

This transcript has 5 exons, is associated with 52 variant alleles and maps to 39 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000009393.8	col1a1a-201	5797	1447aa	ENSDARP00000003177.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140586.2	col1a1a-202	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 697 bps,

Version

ENSDART00000140586.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.