Transcript: ENSDART00000140492.2 si:dkeyp-27c8.1-207

Description

si:dkeyp-27c8.1 [Source:ZFIN;Acc:ZDB-GENE-090313-381]

Location

Chromosome 23: 40,810,286-40,812,119 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 61 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000092956.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140492.2	si:dkeyp-27c8.1-207	1030	292aa	ENSDARP00000119971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7R4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135713.2	si:dkeyp-27c8.1-205	623	208aa	ENSDARP00000116996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RA27	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000136343.2	si:dkeyp-27c8.1-206	566	189aa	ENSDARP00000123020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QH20	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,030 bps, Translation length: 292 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000140492.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140492.2 si:dkeyp-27c8.1-207

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Transcript: ENSDART00000140492.2 si:dkeyp-27c8.1-207

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