Transcript: ENSDART00000140467.3 UGP2-203

Description

UDP-glucose pyrophosphorylase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-6352]

Location

Chromosome 17: 24,446,353-24,470,589 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 8 domains and features, is associated with 478 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000008200.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140467.3	UGP2-203	2149	506aa	ENSDARP00000123568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000163221.3	UGP2-205	6240	510aa	ENSDARP00000129923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBN4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000139963.3	UGP2-201	2183	492aa	ENSDARP00000115076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000131417.2	UGP2-204	753	193aa	ENSDARP00000120993.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142283.2	UGP2-202	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,149 bps, Translation length: 506 residues

Version

ENSDART00000140467.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000140467.3 UGP2-203

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Transcript: ENSDART00000140467.3 UGP2-203

Summary

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