Transcript: ENSDART00000140326.2 si:ch1073-291c23.2-204

Description

si:ch1073-291c23.2 [Source:ZFIN;Acc:ZDB-GENE-081107-2]

Location

Chromosome 13: 347,984-349,965 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 240 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074869.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109634.4	si:ch1073-291c23.2-201	1336	195aa	ENSDARP00000099238.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P317	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185865.1	si:ch1073-291c23.2-207	1321	190aa	ENSDARP00000148723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P9C3	-
ENSDART00000189389.1	si:ch1073-291c23.2-208	1246	194aa	ENSDARP00000151545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9Q9Z6	-
ENSDART00000142695.3	si:ch1073-291c23.2-205	413	69aa	ENSDARP00000115148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147058.3	si:ch1073-291c23.2-206	328	110aa	ENSDARP00000121252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140326.2	si:ch1073-291c23.2-204	253	85aa	ENSDARP00000117421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000133731.2	si:ch1073-291c23.2-202	182	61aa	ENSDARP00000113040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000136340.2	si:ch1073-291c23.2-203	180	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 253 bps, Translation length: 85 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140326.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140326.2 si:ch1073-291c23.2-204

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Transcript: ENSDART00000140326.2 si:ch1073-291c23.2-204

Summary

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