Transcript: ENSDART00000140302.3 naca-202

Description

nascent polypeptide associated complex subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020423-4]

Location

Chromosome 23: 17,866,080-17,873,355 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 42 domains and features, is associated with 231 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005513.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000014723.7	naca-201	915	215aa	ENSDARP00000025953.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GPE2 Q8JIU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000181009.1	naca-205	6491	1005aa	ENSDARP00000153876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000162822.2	naca-204	6195	1030aa	ENSDARP00000136310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQN8	-
ENSDART00000140302.3	naca-202	2800	922aa	ENSDARP00000121027.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000144800.3	naca-203	825	218aa	ENSDARP00000112826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,800 bps, Translation length: 922 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000140302.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140302.3 naca-202

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Transcript: ENSDART00000140302.3 naca-202

Summary

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