Transcript: ENSDART00000140301.2 TTC9-201

Description

si:ch211-259k16.3 [Source:ZFIN;Acc:ZDB-GENE-090312-172]

Location

Chromosome 13: 36,146,415-36,153,572 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 8 variant alleles and maps to 108 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074363.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140301.2	TTC9-201	2919	176aa	ENSDARP00000116371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R268	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000187327.1	TTC9-203	657	218aa	ENSDARP00000146325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PYT1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000182930.1	TTC9-202	543	180aa	ENSDARP00000152435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCM4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,919 bps, Translation length: 176 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000140301.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000140301.2 TTC9-201

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Transcript: ENSDART00000140301.2 TTC9-201

Summary

About Us

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