Transcript: ENSDART00000140275.2 TRIM54-202

Description

tripartite motif containing 54 [Source:ZFIN;Acc:ZDB-GENE-041014-342]

Location

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 268 variant alleles and maps to 115 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061394.7	TRIM54-201	1522	359aa	ENSDARP00000061393.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140275.2	TRIM54-202	429	122aa	ENSDARP00000120891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 429 bps, Translation length: 122 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000140275.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.