Transcript: ENSDART00000140267.2 sptan1-204

Description

spectrin alpha, non-erythrocytic 1 [Source:ZFIN;Acc:ZDB-GENE-051113-60]

Gene Synonyms

alpha2 spectrin, im:7157190, spna2, wu:fa20e05, wu:fb33g08, wu:fk32a10, zgc:112229

Location

Chromosome 21: 13,182,149-13,188,035 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 246 variant alleles and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000019231.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102251.5	sptan1-201	7875	2480aa	ENSDARP00000093027.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R446	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102253.5	sptan1-202	1766	475aa	ENSDARP00000093029.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R445	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140267.2	sptan1-204	538	179aa	ENSDARP00000123572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDX2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140667.2	sptan1-205	861	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132524.2	sptan1-203	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 538 bps, Translation length: 179 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140267.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140267.2 sptan1-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000140267.2 sptan1-204

Summary

About Us

Get help

Our sister sites

Follow us