Transcript: ENSDART00000140239.2 galnt7-203

Description

UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 [Source:NCBI gene (formerly Entrezgene);Acc:553668]

Location

Chromosome 1: 38,146,408-38,154,559 forward strand.

About this transcript

This transcript has 4 exons, is associated with 6 variant alleles and maps to 21 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057303.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079928.6	galnt7-201	3115	652aa	ENSDARP00000074379.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000179352.2	galnt7-204	7568	652aa	ENSDARP00000144558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YBK3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000135666.2	galnt7-202	634	211aa	ENSDARP00000118387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140239.2	galnt7-203	919	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 919 bps,

Version

ENSDART00000140239.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140239.2 galnt7-203

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Transcript: ENSDART00000140239.2 galnt7-203

Summary

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