Transcript: ENSDART00000140213.3 npas1-201

Description

neuronal PAS domain protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-934]

Gene Synonyms

npas3b, si:dkeyp-13e2.1

Location

About this transcript

This transcript has 11 exons, is annotated with 24 domains and features, is associated with 223 variant alleles and maps to 170 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186289.1	npas1-202	3454	770aa	ENSDARP00000146804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q2I0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000140213.3	npas1-201	5128	468aa	ENSDARP00000114846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXP7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 5,128 bps, Translation length: 468 residues

Version

ENSDART00000140213.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.