Transcript: ENSDART00000140197.2 sh3d19-202

Description

SH3 domain containing 19 [Source:NCBI gene (formerly Entrezgene);Acc:553811]

Location

Chromosome 1: 24,412,168-24,458,057 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 429 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000088202.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126950.4	sh3d19-201	3171	958aa	ENSDARP00000111512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A480	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000184421.1	sh3d19-204	5052	959aa	ENSDARP00000154713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181286.1	sh3d19-203	2877	958aa	ENSDARP00000157153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000184987.1	sh3d19-205	2808	935aa	ENSDARP00000152611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000140197.2	sh3d19-202	521	173aa	ENSDARP00000113299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 521 bps, Translation length: 173 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140197.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140197.2 sh3d19-202

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Transcript: ENSDART00000140197.2 sh3d19-202

Summary

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