Transcript: ENSDART00000140104.2 RPEL1-202

Description

ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]

Gene Synonyms

ik:tdsubc_2c8, wu:fa07h08, wu:fb93d11, wu:fc20b11, xx:tdsubc_2c8

Location

About this transcript

This transcript has 5 exons, is associated with 54 variant alleles and maps to 212 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000021218.10	RPEL1-201	1660	228aa	ENSDARP00000023863.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PBW9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144163.2	RPEL1-203	538	137aa	ENSDARP00000117476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140104.2	RPEL1-202	844	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 844 bps,

Version

ENSDART00000140104.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.