Transcript: ENSDART00000140061.3 sqstm1-202

Description

sequestosome 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2204]

Gene Synonyms

sb:cb621, zgc:85784

Location

About this transcript

This transcript has 8 exons, is annotated with 30 domains and features, is associated with 277 variant alleles and maps to 196 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140061.3	sqstm1-202	1939	452aa	ENSDARP00000117113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5Z8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134366.2	sqstm1-201	1010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141840.2	sqstm1-203	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,939 bps, Translation length: 452 residues

Version

ENSDART00000140061.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.