Transcript: ENSDART00000139904.3 kcnq5a-202

Description

potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]

Gene Synonyms

si:dkey-29l6.1

Location

Chromosome 13: 27,378,857-27,620,815 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 34 domains and features, is associated with 2458 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069954.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102232.5	kcnq5a-201	3353	973aa	ENSDARP00000093008.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5A8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000139904.3	kcnq5a-202	2790	929aa	ENSDARP00000118905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHS5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000187472.1	kcnq5a-204	1353	432aa	ENSDARP00000155561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QR27	-
ENSDART00000146230.3	kcnq5a-203	518	173aa	ENSDARP00000121864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7Y2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,790 bps, Translation length: 929 residues

Version

ENSDART00000139904.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139904.3 kcnq5a-202

Summary

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Transcript: ENSDART00000139904.3 kcnq5a-202

Summary

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