Transcript: ENSDART00000139733.3 pcdh1a-203

Description

protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]

Gene Synonyms

si:dkey-18f22.3

Location

About this transcript

This transcript has 5 exons, is annotated with 80 domains and features, is associated with 3923 variant alleles and maps to 311 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139733.3	pcdh1a-203	4201	1190aa	ENSDARP00000120435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NJQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000091004.6	pcdh1a-201	6157	1018aa	ENSDARP00000085437.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134692.2	pcdh1a-202	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 4,201 bps, Translation length: 1,190 residues

Version

ENSDART00000139733.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.