Transcript: ENSDART00000139584.2 itgbl1-202

Description

integrin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-410]

Gene Synonyms

zgc:112304

Location

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 313 variant alleles and maps to 102 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060054.7	itgbl1-201	1411	406aa	ENSDARP00000060053.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S6X9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139584.2	itgbl1-202	1256	186aa	ENSDARP00000112560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RD33	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,256 bps, Translation length: 186 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000139584.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.