Transcript: ENSDART00000139575.2 SPNS1-202

Description

SPNS lysolipid transporter 1, lysophospholipid [Source:ZFIN;Acc:ZDB-GENE-020228-1]

Location

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 188 variant alleles and maps to 72 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000025324.9	SPNS1-201	2593	504aa	ENSDARP00000009970.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1K2F4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185302.1	SPNS1-203	1523	504aa	ENSDARP00000151373.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1K2F4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139575.2	SPNS1-202	760	186aa	ENSDARP00000122340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 760 bps, Translation length: 186 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139575.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.