Transcript: ENSDART00000139417.2 stxbp5a-202

Description

syntaxin binding protein 5a (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-041001-161]

Gene Synonyms

si:ch211-279m15.2, stxbp5

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 349 variant alleles and maps to 203 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142806.3	stxbp5a-203	7176	1128aa	ENSDARP00000114105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139417.2	stxbp5a-202	746	217aa	ENSDARP00000114325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PN18	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133788.2	stxbp5a-201	656	177aa	ENSDARP00000119109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WW52	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 746 bps, Translation length: 217 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139417.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.