Transcript: ENSDART00000139409.2 sat1a.1-202

Description

spermidine/spermine N1-acetyltransferase 1a, duplicate 1 [Source:NCBI gene (formerly Entrezgene);Acc:565700]

Location

About this transcript

This transcript has 3 exons, is associated with 362 variant alleles and maps to 39 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051699.7	sat1a.1-201	810	171aa	ENSDARP00000051698.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V8U3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141866.3	sat1a.1-203	687	96aa	ENSDARP00000124410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000147691.3	sat1a.1-204	896	88aa	ENSDARP00000115154.1	Nonsense mediated decay	-	-
ENSDART00000139409.2	sat1a.1-202	957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 957 bps,

Version

ENSDART00000139409.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.