Transcript: ENSDART00000139354.3 STOX2-202

Description

storkhead box 2a [Source:ZFIN;Acc:ZDB-GENE-090313-101]

Location

Chromosome 1: 39,901,544-39,977,551 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 47 domains and features, is associated with 892 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070162.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149730.3	STOX2-201	6557	1010aa	ENSDARP00000125060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5K8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000181680.1	STOX2-203	5468	993aa	ENSDARP00000147871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139354.3	STOX2-202	4546	1059aa	ENSDARP00000122521.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QWT9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000181673.1	STOX2-204	3157	885aa	ENSDARP00000156286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,546 bps, Translation length: 1,059 residues

Version

ENSDART00000139354.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139354.3 STOX2-202

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Transcript: ENSDART00000139354.3 STOX2-202

Summary

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