Transcript: ENSDART00000139309.3 SPATA1-201

Description

si:dkey-205k8.5 [Source:ZFIN;Acc:ZDB-GENE-141216-11]

Location

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 354 variant alleles and maps to 90 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139819.3	SPATA1-202	1407	468aa	ENSDARP00000112640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139309.3	SPATA1-201	1296	431aa	ENSDARP00000116064.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6D6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,296 bps, Translation length: 431 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000139309.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]