Transcript: ENSDART00000139250.2 CRAT-202

Description

zgc:154046 [Source:ZFIN;Acc:ZDB-GENE-061103-289]

Location

About this transcript

This transcript has 7 exons, is associated with 386 variant alleles and maps to 63 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098567.5	CRAT-201	2514	630aa	ENSDARP00000089338.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139250.2	CRAT-202	793	110aa	ENSDARP00000122790.1	Nonsense mediated decay	F1QSB0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137793.2	CRAT-203	1053	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 793 bps, Translation length: 110 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000139250.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.