Transcript: ENSDART00000139166.2 si:dkey-96f10.1-203

Description

si:dkey-96f10.1 [Source:ZFIN;Acc:ZDB-GENE-090312-154]

Location

Chromosome 23: 12,682,774-12,735,434 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 70 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074457.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000103231.5	si:dkey-96f10.1-201	1467	488aa	ENSDARP00000094008.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180549.1	si:dkey-96f10.1-205	1830	421aa	ENSDARP00000151495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000139166.2	si:dkey-96f10.1-203	1026	342aa	ENSDARP00000122176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000146640.2	si:dkey-96f10.1-204	801	227aa	ENSDARP00000118674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135103.2	si:dkey-96f10.1-202	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,026 bps, Translation length: 342 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000139166.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139166.2 si:dkey-96f10.1-203

Summary

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Transcript: ENSDART00000139166.2 si:dkey-96f10.1-203

Summary

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