Transcript: ENSDART00000139020.3 gbgt1l1-202

Description

globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1117]

Location

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 240 variant alleles and maps to 233 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000019992.7	gbgt1l1-201	1748	316aa	ENSDARP00000018900.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139020.3	gbgt1l1-202	1724	316aa	ENSDARP00000117057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189419.1	gbgt1l1-204	1451	276aa	ENSDARP00000156104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000142064.2	gbgt1l1-203	746	65aa	ENSDARP00000124763.1	Nonsense mediated decay	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,724 bps, Translation length: 316 residues

Version

ENSDART00000139020.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.