Transcript: ENSDART00000138907.3 hnf4a-204

Description

hepatocyte nuclear factor 4, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-1077]

Gene Synonyms

NR2A1, fb58h09, id:ibd1279, sb:eu665, wu:fb58h09

Location

Chromosome 23: 25,832,689-25,861,528 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 24 domains and features, is associated with 999 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021494.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145426.3	hnf4a-206	3523	463aa	ENSDARP00000112924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000028236.7	hnf4a-201	3268	463aa	ENSDARP00000029754.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHH5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138907.3	hnf4a-204	850	274aa	ENSDARP00000120529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFX6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000124103.4	hnf4a-202	1732	42aa	ENSDARP00000109974.2	Nonsense mediated decay	E9QGV6	-
ENSDART00000138272.2	hnf4a-203	732	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000139049.2	hnf4a-205	339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 850 bps, Translation length: 274 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000138907.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138907.3 hnf4a-204

Summary

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Transcript: ENSDART00000138907.3 hnf4a-204

Summary

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