Transcript: ENSDART00000138626.2 SMARCB1-201

Description

SWI/SNF related BAF chromatin remodeling complex subunit B1b [Source:ZFIN;Acc:ZDB-GENE-991008-16]

Location

Chromosome 21: 15,603,597-15,615,756 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 2 domains and features, is associated with 304 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000011594.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145454.3	SMARCB1-206	1547	370aa	ENSDARP00000116163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180558.1	SMARCB1-207	4253	378aa	ENSDARP00000157418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QP61	-
ENSDART00000138626.2	SMARCB1-201	850	283aa	ENSDARP00000118881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000138207.3	SMARCB1-205	831	210aa	ENSDARP00000123574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142354.2	SMARCB1-203	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132254.2	SMARCB1-204	615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000143760.2	SMARCB1-202	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 850 bps, Translation length: 283 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000138626.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138626.2 SMARCB1-201

Summary

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Transcript: ENSDART00000138626.2 SMARCB1-201

Summary

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