Transcript: ENSDART00000138605.3 si:ch73-196i15.3-203

Description

si:ch73-196i15.3 [Source:ZFIN;Acc:ZDB-GENE-091116-4]

Location

Chromosome 8: 20,880,926-20,883,452 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 224 variant alleles and maps to 36 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094281.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000192234.1	si:ch73-196i15.3-204	813	270aa	ENSDARP00000154646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QNK3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000134488.3	si:ch73-196i15.3-202	1902	247aa	ENSDARP00000120402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGB5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000138605.3	si:ch73-196i15.3-203	300	92aa	ENSDARP00000123080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDB2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132120.2	si:ch73-196i15.3-201	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 300 bps, Translation length: 92 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000138605.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138605.3 si:ch73-196i15.3-203

Summary

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Transcript: ENSDART00000138605.3 si:ch73-196i15.3-203

Summary

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