Transcript: ENSDART00000138584.3 hmgn7-202

Description

high mobility group nucleosomal binding domain 7 [Source:ZFIN;Acc:ZDB-GENE-061215-23]

Location

About this transcript

This transcript has 5 exons, is associated with 247 variant alleles and maps to 414 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145477.2	hmgn7-204	1250	107aa	ENSDARP00000113935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QI01	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000089992.6	hmgn7-201	1214	95aa	ENSDARP00000084425.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1A5Y7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192859.1	hmgn7-205	309	103aa	ENSDARP00000152365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000141011.2	hmgn7-203	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138584.3	hmgn7-202	844	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 844 bps,

Version

ENSDART00000138584.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.