Transcript: ENSDART00000138420.2 cntnap5a-203

Description

contactin associated protein-like 5a [Source:ZFIN;Acc:ZDB-GENE-081105-126]

Gene Synonyms

si:dkey-155f10.1

Location

About this transcript

This transcript has 2 exons, is associated with 502 variant alleles and maps to 61 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112295.5	cntnap5a-201	4122	1373aa	ENSDARP00000100966.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137759.2	cntnap5a-202	3839	1279aa	ENSDARP00000120786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QB64	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000139982.2	cntnap5a-204	621	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138420.2	cntnap5a-203	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 540 bps,

Version

ENSDART00000138420.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.