Transcript: ENSDART00000138401.3 SCARF1-201

Description

scavenger receptor class F, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8778]

Location

About this transcript

This transcript has 11 exons, is annotated with 42 domains and features, is associated with 294 variant alleles and maps to 189 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110969.4	SCARF1-202	5082	888aa	ENSDARP00000098630.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBT2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000138401.3	SCARF1-201	3705	888aa	ENSDARP00000113737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,705 bps, Translation length: 888 residues

Version

ENSDART00000138401.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]