Transcript: ENSDART00000138330.2 zgc:158689-204

Description

zgc:158689 [Source:ZFIN;Acc:ZDB-GENE-070112-1902]

Location

Chromosome 16: 5,702,749-5,705,846 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 186 variant alleles and maps to 61 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000017785.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000011166.8	zgc:158689-201	2403	606aa	ENSDARP00000008305.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PEI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131575.2	zgc:158689-202	1217	305aa	ENSDARP00000117948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0J9YIX2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134198.3	zgc:158689-203	624	115aa	ENSDARP00000120096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QF72	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138330.2	zgc:158689-204	268	89aa	ENSDARP00000122236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVJ9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 268 bps, Translation length: 89 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000138330.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138330.2 zgc:158689-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000138330.2 zgc:158689-204

Summary

About Us

Get help

Our sister sites

Follow us