Transcript: ENSDART00000138181.3 RRBP1-204

Description

ribosome binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9795]

Location

About this transcript

This transcript has 9 exons, is associated with 370 variant alleles and maps to 208 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133073.2	RRBP1-203	4674	1336aa	ENSDARP00000118039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4D7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138181.3	RRBP1-204	2452	391aa	ENSDARP00000120512.1	Nonsense mediated decay	-	-
ENSDART00000132173.2	RRBP1-202	527	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139153.2	RRBP1-201	495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 2,452 bps, Translation length: 391 residues

Version

ENSDART00000138181.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.