Transcript: ENSDART00000138103.2 SKOR1-201

Description

SKI family transcriptional corepressor 1b [Source:ZFIN;Acc:ZDB-GENE-050419-82]

Location

Chromosome 18: 19,975,787-19,981,509 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 28 domains and features, is associated with 186 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000062448.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000138103.2	SKOR1-201	2256	751aa	ENSDARP00000122471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000192982.1	SKOR1-204	5406	738aa	ENSDARP00000148780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000090334.6	SKOR1-203	4022	750aa	ENSDARP00000084767.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9E1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000180071.1	SKOR1-202	3629	750aa	ENSDARP00000145337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9E1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,256 bps, Translation length: 751 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1LXZ9

Version

ENSDART00000138103.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000138103.2 SKOR1-201

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Transcript: ENSDART00000138103.2 SKOR1-201

Summary

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